Taxonomic discrimination of Solanum nigrum and S. giganteum by Fourier transform infrared spectroscopy Data
Keywords:
Solanum, analysis, infrared spectra, taxonomic significance
Abstract
Fourier transform infrared spectroscopy (FTIR) provides biochemical profiles containing overlapping signals from a majority of the compounds that are present when whole cells are analyzed. Leaf samples of higher plant species and varieties were subjected to FTIR to determine whether plants can be discriminated phylogenetically on the basis of biochemical profiles. The results showed that the infrared spectra of Solanum were fingerprint-like patterns which were highly typical for different taxa. The principal component analysis of Fourier Transform Infrared (FTIR) data confirmed most of morphological classifications of the species proposed in previous works. The protein absorption bands located between 1800-1500 and the bands between 1500-1000 cm-1 (finger print region) showed variation between the two species S. nigrum and S. giganteum. Infrared spectra of leaves are of taxonomic value in genus Solanum, and this technique can be widely used for identification and classification of other taxa when standard spectra are available.
References
Caicedo AL, Schaal BA. 2004. Heterogeneous evolutionary processes affect ’R’ gene diversity in natural populations of Solanum pimpinellifolium. Proc of the Nat Aca of Sci., USA 101 (50):17444-17449.
Chen L, Carpita NC, Reiter WD, Wilson RH, Jeffries C, McCann MC. 1998. A rapid method to screen for cell-wallmutants using discriminant analysis of Fourier transformation infrared spectra. The Plant Jour., 16:385-392.
Clarke CB. 1885. Solanaceae. In: Flora of British India, (Eds.): H.D. Hooker and C.B., K.C.S.I. Vol. IV. Bishen Singh Mahendra Pal Singh, New connaught Place, London. 229-237.
Edward ES. 1990. The black nightshades (Solanum section Solanum) of the Indian subcontinents. Bot J of Linn Soc., 102:253-259.
Gracelin DHS, DE Britto AJ, Stephan Raj TL, Rathna kumar PBJ. 2011. Assessment of genetic relationships among five species of Solanum as revealed by RAPD markers .Life sci Leaflets., 19:809-814 .
Griffiths PR, de Haseth JA. 1986. Fourier transforms infrared spectroscopy. New York: Wiley.
Hong QH, Cheng ZF, Cheng CG. 2006. Application of FTIR spectroscopy to the analysis of quality mensuration of Paeonia lactiflora Pall. from native habitat. Spectro and Spect Anal .,26:1610-1613.
Jennifer ME, James AC. 1997. Black nightshades, Solanum nigrum L and related species. International Plant Genetic and Research institute (IPGRI)., Italy. 113.
Kim SW, Ban SH, Chung H, Cho S, Chung HJ, Choi PS, Yoo OJ, Liu JR. 2004. Taxonomic discrimination of flowering plants by multivariate analysis of Fourier transform infrared spectroscopy data. Plant Cell Reports., 23:246-250.
Knapp S. 1991. A revision of the Solanum sessile species group (Section Germinate parte) (Solanaceae). Bot J Linn Soc., 105:179-210.
Kusama T, Abe H, Kawano S, Iwamoto M. 1997. Classification of normal and aged soybean seeds by discriminant analysis using principal component scores of near infrared spectra. Nippon Shokuhin Kogyo Gakkai-Shi .,44:569-578.
Lamprell H, Mazerolles G, Kodjo A, Chamba JF, Noel Y, Beuvier E. 2006. Discrimination of Staphylococcus aureus strains from different species of Staphylococcus using Fourier transform infrared (FTIR) spectroscopy. Int J Food Microbiol., 108:125-129.
Lester RN, Seck A. 2004. Solanum aethiopicum L. In: Gruben GJH, Denton OA (eds.) Plant Resources of Tropical Africa 2. Vegetables. Wageningen: PROTA Foundations/Backhuys Publishers/CTA.
Lu HF, Cheng CG, Tang X, Hu ZH. 2004. Spectrum of Hypericum and Triadenum with reference to their identification. Acta Botanica Sinica., 46:401-406.
Mouille G, Robin S, Lecomte M, Pagant S, Hofte H. 2003. Classification and identification of Arabidopsis cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy. The Plant Journal., 35:393-404.
Olmstead RG, Palmer JD. 1997. Implications for the phylogeny, classification, and biogeography of Solanum from cpDNA restriction site variation. Syst Bot., 22(1):19-29.
Omidiji MO. 1982. Interrelationships of Solanum species in different series of the subgenus Leptostemonum (Dun) Bitt. Crop Research., 22:13-21.
Pan YB, Zhao Y, Zhang FY. 2000. IR fingerprint spectrum and Its Analyzing Method. Modern Instruments., 1:1-13.
Rebuffo CA, Schmitt J, Wenning M, von Stetten F, Scherer S. 2006. Reliable and rapid identification of Listeria monocytogenes and Listeria species by artificial neural network-based Fourier transform infrared spectroscopy. App and Environ Microbiol., 72:994-1000.
Rechinger KH. 1958. Solanaceae. In: Symbolae Afghanicae. (Eds.): M. Koie and K.H. Rechinger. Kommission hos Ejnar Munksgaard. 85-88.
Sene CFB, McCann MC, Wilson RH, Grinter R. 1994. Fourier transform Raman and Fourier-transform infrared spectroscopy: an investigation of five higher plant cell walls and their components. Plant Physiol.,106:1623-1631.
Sheng XY, Hu ZH, Lü HF, Wang XH, Baluska F, Samaj J, Lin JX. 2006. Roles of the Ubiquitin/Proteasome pathway in pollen tube growth with emphasis on mg132-induced alterations in ultra structure, cytoskeleton, and cell wall components. Plant Physiol., 141:1578-1590.
Stehfest K, Toepel J, Wilhelm C. 2005. The application of micro-FTIR spectroscopy to analyze nutrient stress-related changes in biomass composition of phytoplankton algae. Plant Physiol and Biochem., 43:717-726.
Surewicz WK, Mantsch HH, Chapman D. 1993. Determination of Protein Secondary Structure by Fourier Transform Infrared Spectroscopy: A Critical Assessment. Biochem., 32(2):389-393.
Wilson RH, Slack PT, Appleton GP, Sun L, Belton PS. 1993. Determination of the fruit content of jam using Fourier transform infrared spectroscopy. Food Chem., 47:303-308.
Wolkers WF, Hoekstra AF. 1995. Aging of Dry Desiccation-Tolerant Pollen Does Not Affect Protein Secondary Structure. Plant Physiol., 109:907-915.
Wolkers WF, Oldenhof H , Alberda M, Hoekstra FA. 1998. A Fourier transform infrared micro spectroscopy study of sugar glasses: application to anhydrobiotic higher plant cells. Biochim Biophys Acta., 1379(1):83-96.
Wu XQ, Lin JX, Zhu JM, Hu YX, Klaus H, Lukas S. 2003. Casparian strips in needles of Pinus bungeana: isolationand chemical characterization. Physiologia Plantarum., 117:421-424.
Chen L, Carpita NC, Reiter WD, Wilson RH, Jeffries C, McCann MC. 1998. A rapid method to screen for cell-wallmutants using discriminant analysis of Fourier transformation infrared spectra. The Plant Jour., 16:385-392.
Clarke CB. 1885. Solanaceae. In: Flora of British India, (Eds.): H.D. Hooker and C.B., K.C.S.I. Vol. IV. Bishen Singh Mahendra Pal Singh, New connaught Place, London. 229-237.
Edward ES. 1990. The black nightshades (Solanum section Solanum) of the Indian subcontinents. Bot J of Linn Soc., 102:253-259.
Gracelin DHS, DE Britto AJ, Stephan Raj TL, Rathna kumar PBJ. 2011. Assessment of genetic relationships among five species of Solanum as revealed by RAPD markers .Life sci Leaflets., 19:809-814 .
Griffiths PR, de Haseth JA. 1986. Fourier transforms infrared spectroscopy. New York: Wiley.
Hong QH, Cheng ZF, Cheng CG. 2006. Application of FTIR spectroscopy to the analysis of quality mensuration of Paeonia lactiflora Pall. from native habitat. Spectro and Spect Anal .,26:1610-1613.
Jennifer ME, James AC. 1997. Black nightshades, Solanum nigrum L and related species. International Plant Genetic and Research institute (IPGRI)., Italy. 113.
Kim SW, Ban SH, Chung H, Cho S, Chung HJ, Choi PS, Yoo OJ, Liu JR. 2004. Taxonomic discrimination of flowering plants by multivariate analysis of Fourier transform infrared spectroscopy data. Plant Cell Reports., 23:246-250.
Knapp S. 1991. A revision of the Solanum sessile species group (Section Germinate parte) (Solanaceae). Bot J Linn Soc., 105:179-210.
Kusama T, Abe H, Kawano S, Iwamoto M. 1997. Classification of normal and aged soybean seeds by discriminant analysis using principal component scores of near infrared spectra. Nippon Shokuhin Kogyo Gakkai-Shi .,44:569-578.
Lamprell H, Mazerolles G, Kodjo A, Chamba JF, Noel Y, Beuvier E. 2006. Discrimination of Staphylococcus aureus strains from different species of Staphylococcus using Fourier transform infrared (FTIR) spectroscopy. Int J Food Microbiol., 108:125-129.
Lester RN, Seck A. 2004. Solanum aethiopicum L. In: Gruben GJH, Denton OA (eds.) Plant Resources of Tropical Africa 2. Vegetables. Wageningen: PROTA Foundations/Backhuys Publishers/CTA.
Lu HF, Cheng CG, Tang X, Hu ZH. 2004. Spectrum of Hypericum and Triadenum with reference to their identification. Acta Botanica Sinica., 46:401-406.
Mouille G, Robin S, Lecomte M, Pagant S, Hofte H. 2003. Classification and identification of Arabidopsis cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy. The Plant Journal., 35:393-404.
Olmstead RG, Palmer JD. 1997. Implications for the phylogeny, classification, and biogeography of Solanum from cpDNA restriction site variation. Syst Bot., 22(1):19-29.
Omidiji MO. 1982. Interrelationships of Solanum species in different series of the subgenus Leptostemonum (Dun) Bitt. Crop Research., 22:13-21.
Pan YB, Zhao Y, Zhang FY. 2000. IR fingerprint spectrum and Its Analyzing Method. Modern Instruments., 1:1-13.
Rebuffo CA, Schmitt J, Wenning M, von Stetten F, Scherer S. 2006. Reliable and rapid identification of Listeria monocytogenes and Listeria species by artificial neural network-based Fourier transform infrared spectroscopy. App and Environ Microbiol., 72:994-1000.
Rechinger KH. 1958. Solanaceae. In: Symbolae Afghanicae. (Eds.): M. Koie and K.H. Rechinger. Kommission hos Ejnar Munksgaard. 85-88.
Sene CFB, McCann MC, Wilson RH, Grinter R. 1994. Fourier transform Raman and Fourier-transform infrared spectroscopy: an investigation of five higher plant cell walls and their components. Plant Physiol.,106:1623-1631.
Sheng XY, Hu ZH, Lü HF, Wang XH, Baluska F, Samaj J, Lin JX. 2006. Roles of the Ubiquitin/Proteasome pathway in pollen tube growth with emphasis on mg132-induced alterations in ultra structure, cytoskeleton, and cell wall components. Plant Physiol., 141:1578-1590.
Stehfest K, Toepel J, Wilhelm C. 2005. The application of micro-FTIR spectroscopy to analyze nutrient stress-related changes in biomass composition of phytoplankton algae. Plant Physiol and Biochem., 43:717-726.
Surewicz WK, Mantsch HH, Chapman D. 1993. Determination of Protein Secondary Structure by Fourier Transform Infrared Spectroscopy: A Critical Assessment. Biochem., 32(2):389-393.
Wilson RH, Slack PT, Appleton GP, Sun L, Belton PS. 1993. Determination of the fruit content of jam using Fourier transform infrared spectroscopy. Food Chem., 47:303-308.
Wolkers WF, Hoekstra AF. 1995. Aging of Dry Desiccation-Tolerant Pollen Does Not Affect Protein Secondary Structure. Plant Physiol., 109:907-915.
Wolkers WF, Oldenhof H , Alberda M, Hoekstra FA. 1998. A Fourier transform infrared micro spectroscopy study of sugar glasses: application to anhydrobiotic higher plant cells. Biochim Biophys Acta., 1379(1):83-96.
Wu XQ, Lin JX, Zhu JM, Hu YX, Klaus H, Lukas S. 2003. Casparian strips in needles of Pinus bungeana: isolationand chemical characterization. Physiologia Plantarum., 117:421-424.
Published
2012-07-09
How to Cite
VS, A., KV, D. B., SS, S., & K, M. (2012). Taxonomic discrimination of Solanum nigrum and S. giganteum by Fourier transform infrared spectroscopy Data. Journal of Research in Biology, 2(5), 482-488. Retrieved from https://ojs.jresearchbiology.com/ojs1/index.php/jrb/article/view/240
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Articles
